Overview
Partek Flow software enables the visual analysis of next-generation sequencing and large-scale multiomic data. An intuitive interface, robust statistical algorithms, and information-rich visualizations empower researchers of all skill levels to analyze their data with confidence.
Easily explore bulk RNA-Seq, single-cell, spatial transcriptomics, ChIP-Seq and ATAC-Seq, DNA-Seq, metagenomics, and microarray data. Compatibility with scalable DRAGEN secondary analysis and flexible installation options accommodate the needs of individual users, core laboratories, and large enterprise organizations.
Key features
Analyze multiomic data sets with easy-to-use tools—no advanced bioinformatics skills needed
Attain results you can trust with industry-standard statistical methods
Explore data with information-rich and publication-ready visualizations
Applications
Dig deeper into RNA-Seq data to gain a comprehensive picture of gene expression by identifying differential expression, alternative splicing, gene fusions, and more.
Partek Flow unlocks RNA-Seq insights
RNA-Seq education
Unlock biological insights from single-cell studies, including single-cell RNA-Seq, ATAC-Seq, CITE-Seq, antibody–capture sequencing, flow cytometry, mass cytometry, and more to understand cellular function at high-resolution.
Partek Flow simplifies single-cell analysis
Single-cell sequencing education
Process and analyze ATAC-Seq/ChIP-Seq data easily in a user-friendly, context-sensitive interface to uncover alterations in chromatin accessibility and gene regulation across the genome.
Partek Flow streamlines ATAC-Seq/ChIP-Seq
ChIP-Seq and ATAC-Seq education
Explore transcriptional activity in intact tissues to link gene expression to structure and functional activity by analyzing and integrating spatially-resolved single-cell RNA-Seq, CITE-Seq, antibody–capture sequencing, and more.
Partek Flow for intuitive spatial data analysis
Spatial transcriptomics education
Evaluate bacterial diversity and detect microbial abundance in various environments to gain insight into microbial biodiversity and function with powerful, easy-to-use analysis tools for microbial characterization.
Investigate disease mechanisms and regulation. Supporting Illumina genotyping and methylation arrays and Affymetrix gene expression.
Identify genetic variants that contribute to disease and phenotypes within WGS and WES data
Explore complex biological relationships and pathways between genes to discover meaningful biological insights
Analyze the expression levels of proteins in healthy and diseased tissues to identify potential biomarkers for early disease detection, diagnosis, and prognosis.
Example workflow
Clarity LIMS
Efficient sample tracking and workflow management for genomics labs.
BaseSpace Sequence Hub
Easy-to-use sequencing run management and bioinformatics environment for computing and storing data to enable secure and efficient sequencing operations.
DRAGEN secondary analysis
Accurate, comprehensive, and efficient analysis of NGS data.
Illumina Connected Analytics
A secure, scalable bioinformatics platform for seamless sequencer integration and flexible workflows.
BaseSpace Apps
BaseSpace Sequence Hub offers a wide variety of NGS data analysis apps for common Illumina sequencing methods.
Partek Flow software
Partek Flow provides an on-premises stand-alone multiomic analysis option and supports a variety of commercial assays.
Emedgene
Emedgene streamlines tertiary analysis workflows for rare disease genomics and other germline research applications.
Illumina Connected Insights
Data interpretation for oncology, diseases, and more.
Correlation Engine
An interactive omics knowledge base and data search engine that puts private data into biological context with highly curated public omics data.
Illumina Connected Multiomics
A powerful cloud-based multiomic analysis and interpretation software, enabling sample to insight workflows with interactive visualizations, infrastructure scalability, and secure data management.
Related applications and methods
Multiomics
Use multiomics profiling to multiply discovery power and better connect genotype to phenotype.
Bioinformatics software tools
Illumina bioinformatics software tools for next-generation sequencing and microarray technologies help transform complex genomic data into insights.
Sequencing data analysis
Our sequencing data analysis software helps you spend more time doing research, and less time configuring and running analysis workflows.
Plans and pricing
Annual and multi-year licenses are available for purchase. Chat with a specialist about pricing.
Subscription options
Feature: Lab Edition
RNA-Seq: checkmark
ChIP-Seq/ATAC-Seq: checkmark
DNA-Seq: checkmark
Metagenomics: checkmark
Microarray: checkmark
Single cell and spatial analysis: Add on
Pathway analysis: Add on
Included data storage (additional storage available for purchase): 1 TB (Illumina hosted)
Illumina hosted: checkmark
Customer hosted: checkmark
Registered users: One per seat
Concurrent users: No
Administrative account: No
User data partition: No
Project collaboration features: No
Task queue control: No
Figures
Build powerful analysis workflows within an easy-to-use visual interface
Visually build analysis workflows that you can save and reuse later or share with colleagues. The context-sensitive interface presents the right options at the right time so that you are never lost.
Speed up discovery with interactive visualizations
Explore and interact with your omics data in real time using information rich visualizations powered by industry-standard statistical algorithms. Save your analysis and collaborate with colleagues anywhere in the world. When ready, export in publication-ready formats.
Analyze multiple omics data types or modalities together
Combine multiple types of molecular information within individual cells to gain a deeper and more comprehensive understanding of cellular behavior and function.
Resources
The complexities of spatial multiomics unraveled
In this on-demand webinar, we explore in situ gene and protein expression in tonsil tissues to gather meaningful and applicable results. You will gain insights into spatial multiomics analysis and practical applications for your research studies using Partek Flow.
Single-cell bioinformatics for researchers
In this on-demand webinar, an expert panel outlines the essential concepts and benefits of single-cell analysis and why scientists should consider it for their research. They illuminate the analytical process and discuss strategies to overcome common analysis challenges.
How to use the Partek Flow Data Viewer
This on-demand webinar demonstrates the Partek Flow data viewer, which features visualizations with intuitive settings and functionality. Watch and learn strategies to increase your productivity.
Partek Flow Lab Edition (Illumina Hosted)
20130166
Provides small labs and departments with the tools to store, manage, and analyze large genomic data sets. Installed on the Illumina cloud and includes one named user license, 1 TB of data storage, and tools for bulk RNA-Seq, DNA-Seq, ChIP-Seq/ATAC-Seq, microarray, and metagenomics applications. Additional add-on tools can be purchased. View less
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Partek Flow Lab Edition (Customer Hosted)
20130164
Provides small labs and departments with the tools to store, manage, and analyze large genomic data sets. Installed on customer cloud or server and includes one named user license, tools for bulk RNA-Seq, DNA-Seq, ChIP-Seq/ATAC-Seq, microarray, and metagenomics applications. Additional add-on tools can be purchased. View less
Partek Flow Enterprise Edition (Illumina Hosted)
20130167
Partek Flow Enterprise is for large labs, departments, or organizations with many users and diverse needs. Installed on the Illumina cloud and includes unlimited user accounts with simultaneous usage limited to the number of seats purchased, 1 TB of data storage, data and user management administration, and tools for bulk RNA- Seq, DNA-Seq, ChIP- Seq/ATAC-Seq, microarray, and metagenomics applications. Additional seats, add-on tools, and storage can be purchased. View less
Partek Flow Enterprise Edition (Customer Hosted)
20130165
Partek Flow Enterprise is for large labs, departments, or organizations with many users and diverse needs. Installed on a customer cloud or server and includes unlimited user accounts with simultaneous usage limited to the number of seats purchased, 1 TB of data storage, data and user management administration, and tools for bulk RNA- Seq, DNA-Seq, ChIP-Seq/ATAC-Seq, microarray, and metagenomics applications. Additional seats, tools, and storage can be purchased. View less
Partek Flow Lab Edition Add On - Pathway (Customer Hosted)
20130172
Add-on tool to Partek Flow Lab Edition for pathway enrichment analysis. View less
Partek Flow Lab Edition Add On - Pathway (Illumina Hosted)
20130174
Partek Flow Lab Edition Add On - Single Cell and Spatial (Customer Hosted)
20130176
Add-on tool to Partek Flow Lab Edition for tertiary analysis of single cell and spatial data. View less
Partek Flow Lab Edition Add On - Single Cell and Spatial (Illumina Hosted)
20130178
Partek Flow Enterprise Edition Add On - Pathway (Customer Hosted)
20130173
An add-on tool to Partek Flow Enterprise Edition for pathway enrichment analysis. Seats purchased must match the number of Partek Flow seats purchased. View less
Partek Flow Enterprise Edition Add On - Pathway (Illumina Hosted)
20130175
Partek Flow Enterprise Edition Add On - Single Cell and Spatial (Customer Hosted)
20130177
Add-on tool to Partek Flow Enterprise Edition for tertiary analysis of single cell and spatial data. Seats purchased must match the number of Partek Flow seats purchased. View less
Partek Flow Enterprise Edition Add On - Single Cell and Spatial (Illumina Hosted)
20130179
Partek Flow Add On - 1TB Additional Data Storage
20130187
An add-on enabling an additional 1TB of data storage for Partek Flow Illumina-Hosted software. View less
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What applications does Partek Flow software support?
Bulk RNA-Seq, single-cell analysis, spatial transcriptomics, ChIP-Seq and ATAC-Seq, DNA-Seq, metagenomics, microarray, and pathway analysis
What technologies does Partek Flow software support?
Bulk and single-cell NGS, spatial analysis, microarray, and flow cytometry
What types of visualizations can I create using Partek Flow software?
Partek Flow software offers many ways to interact with and present your data. Available options include: PCA, t-SNE, UMAP, volcano plots, heatmaps, bubble maps, Venn diagrams, dot plots, KEGG pathways, Sankey plots, histograms, TSS plots, pie charts, cell trajectory graphs, knee plots, scatter plots (2D or 3D), bar charts, tissue spot histology images, violin plots, and box-whisker plots.
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